FastQCFastQC Report
Wed 31 May 2023
EGAF00007936392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449841
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52031.156630898473016No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15000.333451152740635No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11690.2598695983692016No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10790.23986252920476345No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10530.23408270922392582No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8690.19317936782107456No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8500.18895565321969318No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8300.18450963784981805No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7980.17739601325801785No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7090.15761124486207348No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6110.13582576954968534No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6000.133380461096254No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5740.12760064111541633No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5520.12271002420855368No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5450.12115391882909739No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5450.12115391882909739No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5420.12048701652361611No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5170.11492949731127221No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4950.11003888040440955No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4840.10759357195097824No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4640.10314755658110311No Hit

[OK]Adapter Content

Adapter graph