FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432163
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49261.1398476963553104No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22880.5294298678970666No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT16490.3815689913296603No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13450.31122516272795214No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG7700.17817351323458971No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7180.16614101623692912No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6740.155959672623524No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6590.15248876002804496No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5500.1272667951675641No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4960.11477150982383963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)