FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445759
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19960.4477755917435206No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15300.34323479727835No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12910.2896183812329084No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12630.28333696010624576No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12440.27907456719886753No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12240.2745878378226799No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12130.2721201366657768No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10390.23308559109294483No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9910.22231744059009467No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9580.21491433711938512No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9270.20795990658629437No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8930.2003324666467755No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7780.1745337727336969No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6880.15434349054085278No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6780.152100125852759No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6650.1491837517582371No Hit
CAGTGCCTGCAGGTCTTCAGTTTTCATGTAGCCGGACAGGCCAG6580.14761339647657143No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6140.13774259184895873No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5970.1339288718791993No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5300.11889832846897092No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5120.11486027203040207No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4840.10857885090373945No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4820.10813017796612072No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4690.10521380387159879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)