FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445759
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47861.0736743397216884No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29050.6516974418912462No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23000.5159738782615718No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20270.45473002227661136No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14010.31429539280194No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13670.30666795286242116No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13170.29545112942195223No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12670.28423430598148325No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10260.2301692169984229No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10030.2250094782158072No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9800.2198497394331915No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9250.20751123364867566No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8040.18036652092274078No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7890.17700147389060006No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7580.17004704335750934No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6930.15546517288489967No Hit
GAAAACGCTGCGTACTATCAGGTAGTTCCGG6390.1433510035691932No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6180.13863993772419628No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6090.13662090950491185No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5560.12473107665801476No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5420.12159036609468346No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5230.11732797318730526No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5030.11284124381111768No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4960.11127088852945202No Hit

[OK]Adapter Content

Adapter graph