FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427852
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44791.0468573244953863No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12510.2923908267344783No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11310.2643437450333293No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11100.2594355057356282No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10880.2542935407570842No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9880.23092097267279338No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9830.22975234426857888No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7250.1694511186111085No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6460.15098678982451877No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6360.14864953301608966No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6340.14818208165440386No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6330.14794835597356096No Hit
ACCGGCTTTCCACCTCAGCCGGGTATGGCCC6010.1404691341865879No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5590.13065265559118575No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5550.1297177528678141No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5510.1287828501444425No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5220.12200480539999814No Hit
TTTCCGCCTCAGCCGGGTATGGCACCGCGCC4560.10657891046436617No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4400.10283929957087966No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4320.10096949412413639No Hit

[OK]Adapter Content

Adapter graph