FastQCFastQC Report
Sun 21 May 2023
EGAF00007936400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434727
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22920.5272274323886025No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17570.4041616922804427No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15210.3498747489803946No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10460.2406107741180097No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9970.22933933250062682No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9360.21530753783408899No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8930.2054162727412836No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC8760.20150577258831404No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8570.19713521359381864No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8090.18609380139719872No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7940.18264336008575496No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7410.17045180078532043No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7310.1681515065776913No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7230.16631127121158798No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7030.16171068279632966No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6080.13985788782385267No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5930.13640744651240894No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACC5920.13617741709164602No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5880.13525729940859435No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5760.13249694635943937No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5300.12191559300434526No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4350.10006279803186828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)