FastQCFastQC Report
Sun 21 May 2023
EGAF00007936405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487125
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29080.5969720297664871No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27040.5550936617911214No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG20340.4175519630484989No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG16400.33666923274313576No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13100.268924813959456No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12440.25537593020272004No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12180.2500384911470362No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9990.205080831408776No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9180.1884526558891455No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9120.1872209391839877No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8920.18311521683346163No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8740.1794200667179882No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8510.17469848601488325No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7700.15807031049525275No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7470.1533487297921478No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6960.14287913779830638No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6810.13979984603541185No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6720.13795227097767512No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5950.12214523992814985No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5600.11496022581472928No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5200.1067487811136772No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG4970.10202720041057223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)