FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487125
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT71281.4632794457274827No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24840.5099307159353349No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC21060.4323325635103926No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19220.39455991788555295No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC17100.3510392609699769No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13290.27282525019245574No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12740.2615345137285091No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10660.21883500128303826No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9650.1981011034128817No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9510.19522709776751349No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9480.19461123941493455No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9070.18619450859635617No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8530.17510905824993586No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8320.1707980497818835No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7230.14842186297151655No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7130.14636900179625353No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6260.12850910957146522No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5790.11886066204772902No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5590.11475493969720298No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5560.11413908134462407No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5340.10962278675904541No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5290.1085963561714139No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5260.107980497818835No Hit

[OK]Adapter Content

Adapter graph