FastQCFastQC Report
Sun 21 May 2023
EGAF00007936407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478935
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21880.45684696253145No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21070.4399344378673515No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17100.3570421873531899No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14870.31048054537672126No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14390.300458308538737No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11880.2480503617401109No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10040.20963178719450448No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10020.2092141939929218No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG8810.18394980529716976No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT8280.17288358545522878No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT7890.16474051802436657No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7400.15450948458559094No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7330.15304790838005158No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGACGAC7200.15033355256976416No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7100.14824558656185077No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6860.14323446814285865No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6760.14114650213494523No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6690.13968492592940587No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6410.13383862110724837No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5790.12089323185818535No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5770.12047563865660267No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5720.11943165565264599No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5640.11776128284631526No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5200.10857423241149634No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5050.10544228339962626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)