FastQCFastQC Report
Wed 31 May 2023
EGAF00007936408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478935
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55261.1538100159729399No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32180.6719074613465292No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24910.5201123325712258No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17110.35725098395398125No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15750.32885464624635913No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15120.31570046039650473No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10520.21965402403248874No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10210.21318132940795725No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA9090.18979611011932726No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA8980.18749934751062253No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8930.18645536450666583No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7550.15764143359746102No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7020.14657521375552007No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGC7010.14636641715472873No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6680.13947612932861453No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6520.1361353837159531No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6000.12527796047480347No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5980.1248603672732208No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5830.12172841826135071No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5650.11797007944710661No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5580.11650850324156722No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5580.11650850324156722No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5020.10481589359725224No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4870.10168394458538216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)