FastQCFastQC Report
Wed 31 May 2023
EGAF00007936412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468831
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41290.8807011481749286No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38630.8239642856381084No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9990.21308317922662964No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8840.18855408452086148No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8720.18599452681243347No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7970.1699972911347586No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6800.14504160347758574No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6760.1441884175747764No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6610.14098897043924144No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6510.13885600568221812No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6370.13586985502238547No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6330.13501666911957613No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5850.1247784382858642No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5680.12115239819892455No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4990.10643494137546365No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4740.10110252948290535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)