FastQCFastQC Report
Sun 21 May 2023
EGAF00007936413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451212
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11460.2539826068455626No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9870.21874418233557616No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9100.2016790333590419No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8060.17863000097515136No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6480.1436132017765485No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6350.14073207272856217No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6320.14006719679441149No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5960.13208868558460327No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5520.12233717188372649No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4860.10770990133241137No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4580.10150439261367161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)