FastQCFastQC Report
Wed 31 May 2023
EGAF00007936414

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936414
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451212
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35930.7962997438011401No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13190.2923237857149189No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11450.2537609815341791No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11360.251766353731727No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9880.21896580764695972No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8410.18638688687357605No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7160.15868372295063074No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7030.15580259390264442No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6560.14538620426761698No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6030.1336400627642882No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5540.12278042250649362No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5350.11856954159020594No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4740.10505039759580861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)