FastQCFastQC Report
Sun 21 May 2023
EGAF00007936416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478780
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18600.3884874054889511No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11420.238522912402356No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10410.21742762855591294No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10390.21700990016291408No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9140.19090187560048458No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9110.19027528301098626No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8600.179623208989515No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8210.171477505326037No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7400.1545595054095827No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7380.15414177701658383No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7210.1505910856760934No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6750.14098333263711935No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6680.1395212832616233No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5190.10840051798320731No Hit
GTCCACATCAAACTGCCGAAGCTGGCTGCAA4880.1019257278917248No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4860.10150799949872594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)