FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481396
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT31430.6528928366666944No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC28560.5932745598218514No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC25900.5380185959168751No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25220.5238930111592119No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19810.411511520660745No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15900.330289408304182No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG15890.3300816791165693No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15860.32945849155373125No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15380.31948749054832193No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15180.3153329067960681No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13760.2858353621550657No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA12110.2515600461989713No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11200.23265669012621626No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11010.2287098355615751No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG10020.2081446459879185No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9430.19588862391876957No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8850.18384033103723338No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8380.1740770592194368No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7880.16369059983880216No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7540.1566278074599706No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7410.1539273280210056No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6920.1437485978279836No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6890.14312541026514553No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6500.1350239719482505No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6470.13440078438541242No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6360.1321157633216728No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6350.1319080341340601No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6310.13107711738360933No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5800.12048292881536198No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5790.1202751996277493No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5490.1140433239993685No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5390.11196603212324156No Hit
CAGGTCACGCAGACCCACCAGGCGGCAGTTACGTGCTTCGATAC5220.10843463593382578No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5150.10698053162053694No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5080.10552642730724808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)