FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481396
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA64841.346916052480702No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35760.7428395749029905No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA35150.7301680944586162No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA33640.6988009871290995No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20990.43602356479904275No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17660.366849745324016No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16850.3500236811273878No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16350.33963722174675315No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15250.3167870111093569No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13530.2810575908399737No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11730.243666337069689No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11650.24200450356878744No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC10270.2133378756782358No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10090.2095987503012073No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9800.20357460386043924No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9020.18737172722664916No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8960.186125352100973No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8310.17262295490614796No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8240.1711688505928591No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8200.17033793384240833No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8180.16992247546718295No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8170.16971474627957026No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8090.1680529127786687No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7910.16431378740164024No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7610.15808191177325942No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT7140.14831863995546285No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7130.14811091076785018No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6550.13606261788631396No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6500.1350239719482505No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6410.1331544092597363No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6000.12463751256761586No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5980.12422205419239046No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5780.12006747044013662No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5640.11715926181355892No Hit
GGTCACCACTATGACGGCGTTGCCATGCAGT5230.10864236512143849No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5140.10677280243292424No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4980.10344913543112115No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4860.10095638517976883No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4830.10033319761693076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)