FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453723
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37000.8154755214084365No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15210.33522655893573833No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14500.31957824487627917No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13610.29996275260456273No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8290.18271059655340374No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7890.17389464497060983No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7870.17345384739147013No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7720.1701478655479224No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7310.16111151517555866No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7170.15802593212158078No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6950.15317715875104415No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6620.14590399869523915No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5670.12496611368610364No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5420.11945614394685744No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5110.11262378147019216No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4870.10733421052051582No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4800.1057914189935269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)