FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476292
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39240.8238643521201281No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25980.5454637071376383No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22570.4738689711353539No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16180.3397075743451496No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15360.3224912448665945No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14910.31304325917714343No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13750.28868845162211415No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13660.286798854484224No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11450.24039874698714234No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10690.22444214893384729No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9620.20197693851670825No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9170.19252895282725724No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8970.1883298480763901No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8660.18182123571254608No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8640.1814013252374594No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC7980.1675442795595979No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC7660.16082571195821052No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7660.16082571195821052No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7650.16061575672066716No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7510.15767638339506015No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7010.14717862151789238No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6730.14129987486667844No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6710.14087996439159173No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6380.13395144155266098No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6340.13311162060248755No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6230.13080211298951064No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6140.12891251585162045No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6060.12723287395127358No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5960.12513332157584003No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5920.12429350062566662No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5860.12303376920040647No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5830.1224039034877764No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5610.11778488826182257No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5590.11736497778673588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)