FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479202
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40160.8380599413191097No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26290.5486204147728933No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24020.5012499947829934No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16330.3407748715572973No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15830.330340858343663No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14870.3103075529734851No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14340.2992474989670327No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13360.2787968330683094No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11010.22975697096422804No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11000.22954829069995533No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10120.2111844274439589No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9110.19010772075241755No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9090.1896903602238722No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8890.18551675493841846No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8440.17612614304614754No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8350.17424802066769338No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC8290.17299593908205727No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7650.15964040216860528No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7480.15609283767596965No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7450.15546679688315157No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC7200.15024979027633442No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6950.14503278366951722No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6700.13981577706270007No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6470.13501613098442827No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6380.1331380086059741No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6040.12604287962070274No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6000.125208158563612No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5930.12374739671370319No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5880.12270399539233975No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5810.12124323354243097No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5660.11811302957834065No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5590.11665226772843186No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5500.11477414534997767No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5310.11080922032879663No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5190.10830505715752438No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4800.1001665268508896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)