FastQCFastQC Report
Sun 21 May 2023
EGAF00007936425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462419
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG18740.40526016448286073No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14540.3144334467225611No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13910.3008094390585162No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13430.2904292427430534No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12560.27161513692127703No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12270.26534376831401824No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11640.2517197606499733No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10510.2272830484906546No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7910.171056985115231No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7030.15202662520354915No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG6630.14337646160733014No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5900.12758991304423045No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT5690.12304857715621546No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG5440.11764222490857858No Hit
ACCCAGGGTGATGGAGCGAACACGGTCGCTGTAGCCGCATTCTT5330.11526342991961835No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5200.11245212675084718No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4920.10639701223349386No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)