FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462419
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35490.767485765074532No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27070.5853998213741217No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18640.403097623583806No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14490.31335217627303374No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14240.3079458240253969No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13320.28805044775409316No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12320.2664250387635456No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8570.18532975504899238No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7970.17235450965466384No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6610.1429439534275192No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5910.12780616713413592No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5780.12499486396536474No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5660.12239981488649905No Hit
GATGCAGCTTCCAACTCTGCAAACCGTCAGG5520.11937225762782239No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5420.11720971672876764No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5060.10942456949217053No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5040.10899206131235956No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4670.10099065998585698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)