FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492496
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24990.5074152886520905No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24080.48893798122218257No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23590.47898866183684735No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22730.4615265910789123No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20170.4095464734738962No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17910.36365777590071796No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15920.32325135635619373No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15600.31675384165556675No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12670.2572609726779507No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12630.2564487833403723No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10800.21929112114616162No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10250.20812351775445892No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9240.1876157369806049No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8480.17218413956661577No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8410.1707628082258536No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7720.1567525421526266No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7640.15512816347746985No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7340.14903674344563203No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6400.1299502940125402No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6370.12934115200935642No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6230.12649848932783211No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6110.12406192131509698No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5910.1200009746272051No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5540.11248822325460513No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5160.10477242454761054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)