FastQCFastQC Report
Wed 31 May 2023
EGAF00007936428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492496
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT58711.1920909002306617No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42300.8588902244891329No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33860.6875182742600955No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24940.5064000519801176No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20340.41299827815860435No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18600.37766804197394493No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18060.3667034859166369No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17950.36446996523829633No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15880.32243916701861536No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13370.2714742860855723No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12010.24385984860790746No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11800.23959585458562102No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9630.19553458302199409No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9420.1912705889997076No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8560.1738085182417725No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8080.16406224619083198No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7780.1579708261589942No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7690.15614340014944283No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6980.14172703940742667No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6860.13929047139469153No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6610.13421428803482668No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6330.12852896267177805No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5890.11959487995841592No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5390.10944251323868621No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5320.10802118189792405No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5310.10781813456352946No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5290.10741203989474027No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5170.10497547188200514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)