FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456787
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49341.0801533318592693No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41460.9076440441606264No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18060.3953702710453669No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17310.3789512398557752No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16150.3535564716158735No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15380.3366995995945594No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11700.2561368865576297No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10470.22920967540669943No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10330.2261447895846423No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9520.2084122358998833No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8980.19659053344337732No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8550.18717695556134478No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8430.18454991057101014No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7880.1725092876986429No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6530.14295503155737796No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6510.1425171907256555No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6470.14164150906221062No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5670.12412787579331286No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5560.1217197512188394No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5560.1217197512188394No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5460.1195305470602272No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC5050.1105548100099171No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4850.10617640169269266No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4720.10333043628649677No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4710.10311151587063555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)