FastQCFastQC Report
Wed 31 May 2023
EGAF00007936434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458271
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT83651.8253391552160187No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40880.8920485913356945No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22330.48726626821247687No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13450.2934944607012008No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13330.29087592276185925No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12770.27865607904493195No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11520.2513796421767906No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10660.23261345361150934No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10560.23043133866205803No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8130.17740594539039126No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7800.17020496605720195No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7080.15449373842115255No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6780.14794739357279862No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6350.138564299290158No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6200.13529112686598105No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5770.1259080325833404No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5400.11783420727037058No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4650.1014683451494858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)