FastQCFastQC Report
Wed 31 May 2023
EGAF00007936437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482621
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10440.21631880916909954No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA7690.15933827993394403No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6020.12473555854386775No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5930.12287074122344448No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5210.10795220266005831No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4870.10090733722734817No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4860.10070013530285668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)