FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482621
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41810.8663112462988556No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10650.2206700495834205No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8470.17550003004427905No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA7620.1578878664625037No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6580.13633886631539033No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6460.13385244322149265No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5630.11665468348870026No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5480.11354665462132814No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5460.11313225077234518No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5460.11313225077234518No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5260.10898821228251569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)