FastQCFastQC Report
Wed 31 May 2023
EGAF00007936439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403666
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24630.6101579028206487No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20850.5165161296715601No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18760.4647406519251064No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18400.4558223878156694No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16470.4080105830067432No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15600.3864581114089371No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT14260.3532623505571438No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13650.3381508474828199No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13110.3247734513186645No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10880.2695297597518741No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9510.23559081022429434No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7950.19694499908340063No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7430.18406306203643605No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7220.17886074130593113No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6590.16325377911441638No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5520.1367467163447008No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5130.12708526355947738No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4990.12361704973914078No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4670.11568970386408567No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4440.10999192401638978No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4290.1062759806374577No Hit
ATCGCCGGTCGGGGTGCCGGTGGTCGGCTTCACCTGGACCAGCA4210.10429414416869391No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4100.10156911902414371No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4040.1000827416725709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)