FastQCFastQC Report
Sun 21 May 2023
EGAF00007936440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403666
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42691.0575574856440721No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41621.0310504228743567No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33770.8365827193769106No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24690.6116442801722216No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19180.4751452933861163No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17020.4216357087294942No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15910.39413772772539674No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14540.36019877819781704No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14200.35177597320557097No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12900.3195711305881595No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12550.31090059603731796No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8370.20734964054441046No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7390.18307214380205417No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5730.14194903707520573No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5410.13402169120015062No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5110.12658980444228643No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4560.11296467871953547No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4480.11098284225077168No Hit
ACGGCAGCGACTTCCAAAGCCGTTGCTGCCA4310.10677143975464864No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4130.10231230769993013No Hit

[OK]Adapter Content

Adapter graph