FastQCFastQC Report
Sun 21 May 2023
EGAF00007936444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373184
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA12950.3470138055222089No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9540.2556379694735037No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8690.2328610015434745No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8110.217319070485337No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7830.2098160692848568No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7410.1985615674841365No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6240.16720974103927286No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6150.16479806208197564No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5470.14657648773795232No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5440.1457725947521866No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5400.14470073743783227No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4810.12889084205110615No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4700.1259432344366318No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4530.12138784085062597No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4420.1184402332361516No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4220.11308094666438004No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4190.1122770536786143No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4160.11147316069284857No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4100.10986537472131709No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC3800.10182644486365976No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG3760.10075458754930544No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)