FastQCFastQC Report
Wed 31 May 2023
EGAF00007936446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387782
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34800.8974114321964403No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5990.15446823215105396No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5810.14982644888107235No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5640.14544254245942306No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5380.138737744402783No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4730.12197574926118282No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4550.11733396599120124No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4310.11114492163122579No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4300.11088704478289348No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG4030.1039243698779211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)