FastQCFastQC Report
Sun 21 May 2023
EGAF00007936448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386223
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35090.908542474166479No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29690.7687268754061772No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6670.1726981562465208No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6300.1631181985536853No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6100.15793984304404451No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5630.1457707075963886No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5250.13593183212807108No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4840.12531620333330745No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4600.11910217672173846No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4300.11133464345727728No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4150.10745087682504667No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG4140.10719195904956462No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA3960.10253143909088791No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG3940.10201360353992382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)