FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446462
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38660.8659191599733012No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24810.5557023890051113No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23370.523448804153545No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22120.49545090063656033No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17670.395778364116095No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17660.39555438088795913No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15780.3534455339984142No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14900.333735009922457No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14320.32074398269057613No Hit
ATCAACTCCAACGCCCCGATGGATAAATGCG10510.23540637277080692No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10310.2309267082080894No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10290.23047874175181762No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9970.22331127845146956No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9520.21323203318535508No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8950.2004649891816101No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8150.1825463309307399No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7420.16619555527682087No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7410.16597157204868498No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7060.1581321590639293No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6410.1435732492350973No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6350.142229349866282No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6210.13909358467237973No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5370.12027899350896605No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5230.11714322831506377No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5080.1137834798930256No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4990.1117676308398027No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4990.1117676308398027No Hit
ATCCCTCTGGGCATCGACGTAGGTGGCGGTC4880.10930381533030807No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA4860.10885584887403632No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4780.10706398304894929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)