FastQCFastQC Report
Sun 21 May 2023
EGAF00007936464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411118
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19270.4687218754712759No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16380.39842575610895165No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG10770.2619685832291459No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9550.23229340481321661No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7890.19191570303416539No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7640.1858347238505733No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7530.1831590930097928No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7040.17124037380995238No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6340.1542136320958946No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5880.14302463039808522No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5450.1325653462023069No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5280.1284302803574643No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4830.11748451782699856No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4220.10264692861903396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)