FastQCFastQC Report
Wed 31 May 2023
EGAF00007936465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences279487
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8630.30878001481285355No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7670.2744313689008791No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7430.2658442074228855No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6810.24366070693806868No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5710.20430288349726464No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5690.20358728670743184No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4960.17746800387853462No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG4410.15778909215813258No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4300.15385330981405215No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4240.15170651944455377No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG4220.15099092265472097No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT3950.14133036599197818No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA3680.13166980932923536No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG3670.13131201093431896No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG3660.13095421253940256No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC3250.11628447834783012No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT3120.11163309921391693No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT2960.10590832489525452No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG2850.1019725425511741No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)