FastQCFastQC Report
Sun 21 May 2023
EGAF00007936466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences279487
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25940.9281290364131426No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20250.7245417497057107No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15670.5606700848339995No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7450.2665598042127183No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6670.23865152940923906No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5740.20537627868201383No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5670.20287168991759905No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4510.1613670761072966No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT4280.15313771302421939No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4230.15134872104963737No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC4230.15134872104963737No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4110.14705514031064057No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4040.14455055154622576No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT3910.13989917241231256No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3890.13918357562247977No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA3790.13560559167331576No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT3750.13417439809365017No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC3700.13238540611906816No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC3060.10948630884441853No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG3040.10877071205458572No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT3040.10877071205458572No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC2850.1019725425511741No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC2850.1019725425511741No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC2840.10161474415625771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)