FastQCFastQC Report
Sun 21 May 2023
EGAF00007936467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402639
Sequences flagged as poor quality0
Sequence length44
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT34330.8526248078303393No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG29430.7309277044697607No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG20190.5014417381326697No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18990.4716383658810995No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA18630.4626973542056284No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG16150.40110371821904983No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG15290.37974463477209114No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG14740.3660847558234548No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14700.36509131008173573No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT12200.3030009512242977No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG11910.29579846959683487No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC11440.2841254821316365No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT11170.2774197233750332No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11160.27717136193960346No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT10770.26748526595784317No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9980.2478647125588927No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG9920.2463745439463142No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9860.2448843753337357No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9620.2389237008834216No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8880.22054495466161997No Hit
CATGGAGTCCTGCAGCGGCATCGGCGGAGGCGGGAAGCGGGTTG8850.21979987035533072No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8820.21905478604904144No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7970.19794406403751252No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7900.19620553398950424No Hit
GTGCAGGGACAGATCCAGCGGTGCATCTGGGTCCTCGTAACGTG7840.19471536537692574No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7640.18974813666833068No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA7590.18850632949118193No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG7530.1870161608786034No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7370.1830423779117274No Hit
CCACTGCGGCGGCAGATGCGGAGCACGCGGGTCCCAAGGGCCCT7370.1830423779117274No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6920.17186611331738855No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT6860.17037594470481002No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG6430.15969640298133067No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGGTTT6380.15845459580418192No Hit
CCACTGAGGCGGCAGGTGCGGCGCGCGCGGGTCCCACGGGCCCT6360.15795787293332242No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6350.15770951149789264No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6240.15497753570816536No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6210.15423245140187614No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5890.14628488546812407No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5890.14628488546812407No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5830.14479471685554554No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5800.1440496325492563No Hit
CCATTGCGGCGGCAGGTGCGGAGCACGCGGATCCCACGGGCCCT5730.142311102501248No Hit
CATAGAGTCCTGCAGCGGCATCGGCGGCGGCGGGAAACGGGTCG5730.142311102501248No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5480.1361020666155042No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5230.1298930307297604No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5150.1279061392463224No Hit
GTCAGAGGTGGCGAAGACGGTCGGAGAGCCCACACCGGAACGCA5140.12765777781089263No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5070.12591924776288438No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4780.11871676613542156No Hit
TTTAGACGGAGGGATGTCGGTCGGTGGCATCGGGCCCACGCCAC4730.1174749589582728No Hit
CGGAGAACCGCCCTGACCCATAACCTGAATCGGCTGCAGGACCG4660.11573642891026453No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT4650.11548806747483477No Hit
CGGACGTACCGGGGCGAATGCCTGACCCGCTGCCTGGGTCAGGC4640.11523970603940503No Hit
GGCGCGCGGTGGGGTCTGCATAGTCGCCGGTGCCCACTGACGCA4610.11449462173311577No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT4500.11176264594338849No Hit
CGGCGGCAGCGGCATCGGAGGGATGTTGTAGAAAACGGTCGGGG4490.11151428450795875No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4440.11027247733080998No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4270.10605033292850419No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4250.10555361005764469No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT4250.10555361005764469No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG4110.10207654996162815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)