FastQCFastQC Report
Sun 21 May 2023
EGAF00007936468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402639
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA35530.8824281800819097No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG28830.7160260183439756No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19800.4917556421509094No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC19410.48206954616914904No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19290.47908920894399204No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC18480.4589719326741821No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC18180.4515210896112895No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18020.44754730664441345No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC16660.4137701514259672No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC15580.386947116399554No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC14450.35888227419599195No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12860.31939280596266134No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC12010.29828208395113237No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11870.29480502385511587No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC11580.287602542227653No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC11360.2821385906481985No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11070.2749361090207357No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC11010.2734459404081572No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10490.26053114576581005No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10430.25904097715323154No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC10160.2523352183966282No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCAC9250.2297343277725208No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9010.22377365332220672No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8740.21706789456560344No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG8480.21061049724442987No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA8120.2016694855689588No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG7740.1922317510226282No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG7360.18279401647629762No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7290.18105548642828936No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT7190.17857187207399183No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7120.17683334202598358No Hit
GGTCTGCAATCTTCCTCTTACCCAGGTTATG7090.1760882577196943No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7030.1745980891071158No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6970.1731079204945373No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6850.17012758326938027No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6680.16590543886707448No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6670.16565707743164473No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6650.16516035456078523No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6490.16118657159390917No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC6380.15845459580418192No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6310.15671606575617364No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6230.15472917427273564No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC6170.1532390056601571No Hit
GGTCTGCAGAGCTCTTCTTACCCGGGTTATG6090.1512521141767191No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6040.15001030699957033No Hit
CCGCACCTGCAGAGCGAAACCGGTCCGCCGC5590.13883404240523148No Hit
GGCCTGCAGTCTTCTTCTTATCCGGGTTACG5570.13833731953437198No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5440.1351086208737852No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5290.1313831993423389No Hit
GTTGGCCACGGTGTTACCGTACGTGACGTGC5180.12865122355261166No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5110.12691269350460338No Hit
CCAATTTTCTATCCGCCGGTACTGCAGCCGA5010.12442907915030585No Hit
ACCCCGCTGCCGCCGGTTTCTCCGGGCGATC4860.12070365761885958No Hit
GGTCACGGTCAGGACCAGGTTAGCCAGTTCC4850.12045529618342982No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4850.12045529618342982No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT4850.12045529618342982No Hit
GGCCGCCCTTCCCTGAAACTGCAGGCTGCCC4840.12020693474800008No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4790.1189651275708513No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4730.1174749589582728No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC4730.1174749589582728No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG4720.11722659752284303No Hit
CAGCCTACTCCGTCCCCGCCGCGCATGCACC4520.11225936881424799No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA4480.111265923072529No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4410.10952739302452072No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4390.1090306701536612No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4370.10853394728280172No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT4360.10828558584737195No Hit
GGTTACCAGGAACCGCCGGCCCCGCAGGCAC4120.1023249113970579No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG4090.10157982709076865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)