FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429791
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47641.1084457329260036No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14740.3429573909179113No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12620.29363109046024694No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11330.2636165019742154No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9600.2233643794309327No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8770.20405266745929998No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8140.18939438005914502No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7900.1838102705733717No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7310.17008266808751232No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7210.1677559558017734No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6760.15728575051594845No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6470.1505382848873057No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5260.12238506622986522No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5260.12238506622986522No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5150.11982568271555244No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4790.11144951848689247No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4340.10097931320106748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)