FastQCFastQC Report
Sun 21 May 2023
EGAF00007936476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498692
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT112132.2484820289878322No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28310.5676850641277582No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27340.5482341806164928No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23230.4658185814089658No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17060.34209492031153493No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC16030.321440889366583No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14030.2813359749103655No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13770.27612233603105724No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10800.21656653806357432No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10600.21255604661795258No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG10120.20293086714846037No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10040.20132667057021167No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9300.1864878522214112No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8180.16402910012592944No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8140.16322700183680508No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7580.1519976257890642No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7300.14638293776519376No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6920.13876300401851244No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6850.13735933201254483No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6590.13214569313323654No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6110.12252051366374436No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6040.12111684165777674No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5890.11810897307356044No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5790.11610372735074957No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5600.1122937604774089No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5520.11068956389916021No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5510.1104890393268791No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5020.10066333528510583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)