FastQCFastQC Report
Wed 31 May 2023
EGAF00007936478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475763
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65081.3679079709855537No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22170.46598831771281085No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11860.24928378205114735No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11700.24592076306900706No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11450.24066604590941287No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11220.23583170612258625No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10920.22952604553107325No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT10260.21565359222974465No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC8430.17718906262151535No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7860.16520830749764062No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7750.1628962319474192No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7010.14734226915502047No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6850.1439792501728802No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6710.14103660856350747No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5880.12359094759365483No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5820.12232981547535224No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5770.12127887204343339No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5760.12106868335704961No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA5420.11392226802000155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)