FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454723
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65251.434939512626368No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29290.6441284034456142No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT15070.33141055103876427No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT14750.3243732997891024No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11920.2621376090499051No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11860.2608181244405935No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11220.24674362194126975No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10210.2245322976845244No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9730.21397642081003163No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8400.1847278453036244No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8170.17966982096792994No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8030.17659102354620285No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7800.17153299921050835No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7680.1688940299918852No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7660.1684542017887813No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7020.15437969928945755No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6960.15306021468014594No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6720.14778227624289952No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6530.1436039083134128No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6310.13876579807927023No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5790.12733026479856968No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5720.12579086608770615No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5360.11787395843183653No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5310.11677438792407685No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4750.10445919823716857No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4740.10423928413561662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)