FastQCFastQC Report
Wed 31 May 2023
EGAF00007936486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454437
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63561.3986537187773003No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10740.23633638986262123No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10310.22687413216793528No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7080.15579717320552683No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6970.15337659565572345No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6140.1351122377799343No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5950.13093124019391025No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5250.11552756487697964No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG4880.10738562220945919No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4770.1049650446596558No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4590.10100409957815935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)