FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464635
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63671.3703229416638867No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20660.44465010169272656No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20160.4338889666081978No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17390.3742722782399087No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14630.31487081257331023No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12120.2608499144489761No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11270.24255598480527724No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10790.2322252951241297No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10740.23114918161567682No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10140.21823581951424237No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9660.20790512983309478No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5940.12784228480420115No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5800.1248291669805331No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5640.12138560375348391No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5550.11944859943826874No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5150.11083969137064577No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4770.10266122870640396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)