FastQCFastQC Report
Wed 31 May 2023
EGAF00007936491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445783
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11150.2501216959821258No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8490.19045140797204022No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7460.16734599569745817No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6910.15500815419161343No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6430.14424058342287616No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6130.13751085169241536No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6080.13638922973733858No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5480.122929766276417No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5050.11328381746275654No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4620.10363786864909608No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4500.10094597595691178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)