FastQCFastQC Report
Sun 21 May 2023
EGAF00007936492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445783
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63761.4302923171139321No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11230.2519162911102487No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11110.2492243984180644No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7560.16958923960761177No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7430.1666730225244121No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7010.157251398101767No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6850.15366220784552126No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6750.15141896393536766No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6440.1444649078138915No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6200.1390811224295229No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5530.12405138823149381No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5490.12315409066743237No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4660.10453516621315752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)