FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514366
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13570.2638199258893473No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA12180.23679636678940677No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11560.2247426929462678No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10610.2062733539930711No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9360.18197159221254905No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9290.18061069355283982No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9220.1792497948931306No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8070.1568921740550503No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7480.1454217424946439No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6680.1298686149551098No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5670.11023279143644797No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5560.10809423639976204No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5420.10537243908034356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)