FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514366
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30850.599767480743284No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22750.4422920644055011No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14160.27529035744975366No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC12280.23874050773184854No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10530.2047180412391177No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9780.19013698417080444No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9550.1856654600031884No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9370.1821660063067932No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8740.16991791836941011No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7310.1421167028924929No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5960.11587080016952908No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5960.11587080016952908No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5690.11062161962493633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)