FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496746
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38910.7832977014409779No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30690.6178207776207559No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20350.40966610702451556No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13170.26512543633969876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12650.25465730977199613No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10900.2194280376691508No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8180.1646716833150141No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7550.1519891453579898No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7300.14695639220044046No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6940.1397092276535694No Hit
AAAAACGACCTGGCAAACGCGCCGATCAAAC6810.13709219601164377No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6520.13125420234888655No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6140.12360441754941157No Hit
CTGCCGACCTTCTCCAACATTGGTGTAGGCC5260.10588912643483793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)