FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409778
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18340.4475594102172396No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16980.4143707080419154No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13300.3245659845086852No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12710.3101679445943901No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12400.30260287277501474No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12340.3011386653261034No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9520.23232091522726941No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8880.21670270243888154No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7890.19254327953184408No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7790.19010293378365847No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7400.1805855853657346No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6410.15642616245869714No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5850.1427602262688578No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5370.13104656667756687No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5330.13007042837829264No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4640.11323204271581197No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4470.10908345494389646No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4300.10493486717198092No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC4190.10225048684897675No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4180.1020064522741582No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4110.10029821025042827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)